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ASCT+B Validation Reports for Mouth (2026-01-28)

Table of contents

Invalid terms

These are the reports related to issues in the terms found in the ASCT+B table. We validate only CL, UBERON and PCL terms.

Terms not found

This report provides a list of terms not found neither in UBERON nor in CL. Please remove these terms from the ASCT+B table - disconsider this message if a term was recently added to the ontology.

  • No issues found.

Typos or punctuation mistakes

This report provides a general quality check of the terms used in the ASCT+B table. Typos, font case (upper case), punctuation mistakes in IDs: two colons, spaces, underscore instead of a colon.

  • No issues found.

Different labels

This report provides a list of terms having different names/labels found in the ontology and related to the one found in the ASCT+B table. Make sure to add the term's name/label in the column AS/N/LABEL or CT/N/LABEL. If the SME wants to give another name/label, please use the column AS/N or CT/N. N is the number in the column.

If the term's name/label and the name/label given by SME are too different, please make sure the term ID and its name/label are matching in OLS.

If the name/label in the ontology contains obsolete, please look into OLS, clicking on the term ID, for its replacement.

  1. The term UBERON:0004923 has a different name/label in the source ontology in the following 1 row 31. The name/label in the ASCT+B table is mucosa of the lip and the one in the ontology is organ component layer. For reference, the given name/label by SMEs is mucosa of the lip. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.

Blank ontology ID

This report provides a list of blank spreadsheet cells that often mean no ontology mapping found by the author. However, in some cases, a term with a synonym already exists. Please search in OLS.

You can find more information on the New CL terms or New UBERON terms reports.

  1. No term id was found for the name/label tongue in the following 1 row 11.

  2. No term id was found for the name/label gingival attachment in the following 18 rows 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29.

  3. No term id was found for the name/label junctional epithelium cell in the following 1 row 29.

  4. No term id was found for the name/label parotid gland ducto-acinar in the following 19 rows 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51.

  5. No term id was found for the name/label basal ductal cell in the following 2 rows 34, 68.

  6. No term id was found for the name/label helper T in the following 3 rows 37, 55, 72.

  7. No term id was found for the name/label ionocyte in the following 3 rows 39, 57, 74.

  8. No term id was found for the name/label myoepithelial cell in the following 3 rows 42, 61, 78.

  9. No term id was found for the name/label periacinar fibroblast in the following 3 rows 43, 62, 79.

  10. No term id was found for the name/label periductal fibroblast in the following 3 rows 45, 64, 81.

  11. No term id was found for the name/label serous acinar cell in the following 1 row 46.

  12. No term id was found for the name/label tuft cell in the following 2 rows 48, 84.

  13. No term id was found for the name/label excretory duct epithelial cell in the following 2 rows 49, 85.

  14. No term id was found for the name/label sublingual gland ducto-acinar in the following 16 rows 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67.

  15. No term id was found for the name/label demilune acinar cell in the following 2 rows 52, 69.

  16. No term id was found for the name/label mucous acinar cell in the following 2 rows 60, 77.

  17. No term id was found for the name/label seromucosal acinar cell in the following 2 rows 65, 82.

  18. No term id was found for the name/label submandibular gland ducto-acinar in the following 20 rows 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87.

  19. No term id was found for the name/label excretory duct in the following 1 row 85.

  20. No term id was found for the name/label intercalated duct in the following 1 row 86.

  21. No term id was found for the name/label striated duct in the following 1 row 87.

Blank ontology ID missing parent

This report provides a list of CT terms with blank ontology ID without an upper term from Cell Ontology. Please, create an upper level in the ASCT+B table and add an upper term for them. Please, make sure the term without ontology ID doesn't exist in the ontology.

  1. The term junctional epithelium cell without ontology ID has no parent that is from the CL ontology in the following 1 row 29.

  2. The term basal ductal cell without ontology ID has no parent that is from the CL ontology in the following 2 rows 34, 68.

  3. The term helper T without ontology ID has no parent that is from the CL ontology in the following 3 rows 37, 55, 72.

  4. The term ionocyte without ontology ID has no parent that is from the CL ontology in the following 3 rows 39, 57, 74.

  5. The term myoepithelial cell without ontology ID has no parent that is from the CL ontology in the following 3 rows 42, 61, 78.

  6. The term periacinar fibroblast without ontology ID has no parent that is from the CL ontology in the following 3 rows 43, 62, 79.

  7. The term periductal fibroblast without ontology ID has no parent that is from the CL ontology in the following 3 rows 45, 64, 81.

  8. The term serous acinar cell without ontology ID has no parent that is from the CL ontology in the following 1 row 46.

  9. The term tuft cell without ontology ID has no parent that is from the CL ontology in the following 2 rows 48, 84.

  10. The term excretory duct epithelial cell without ontology ID has no parent that is from the CL ontology in the following 2 rows 49, 85.

  11. The term demilune acinar cell without ontology ID has no parent that is from the CL ontology in the following 2 rows 52, 69.

  12. The term mucous acinar cell without ontology ID has no parent that is from the CL ontology in the following 2 rows 60, 77.

  13. The term seromucosal acinar cell without ontology ID has no parent that is from the CL ontology in the following 2 rows 65, 82.

Terms from another ontology

This report provides a list of terms from another ontologies that we do not validate. Foundational Model of Anatomy (FMA) ontology IDs are provided when an adequate term is not found in UBERON. Same case for Anatomic Ontology for Human Lung Maturation (LMHA) and Interlex IDs (ILX) from Stimulating Peripheral Activity to Relieve Conditions (SPARC). You can request cross-database request the same way a new term request. Please be sure if a term with a related synonym is already in the source ontologies CL or UBERON or PCL.

  • No issues found.

Relationship reports

These reports are other representations of the ASCT+B table. We split each row into pairs with adjacent terms, resulting in a table with two primary columns, object (o), left side and subject (s), right side. The experts' labels for the subject and object are in the columns user_slabel and user_olabel. The other columns are the subject label (s_label) and object label (o_label), the label from the source ontologies.

The report means it could not find a partonomy relationship in the source ontologies, but it doesn't mean this relationship is entirely invalid. In some cases, the pair is in the inverse order. In other cases, the relationship is missing in the source ontologies. Finally, how it was modelled in the ASCT+B table is not aligned with the ontologies sources and needs a more general discussion.

How to read a table entry

In the ASCT+B table

AS/2 AS/2/LABEL AS/2/ID AS/3 AS/3/LABEL AS/3/ID
lens lens UBERON:0000965 ciliary zonules suspensory ligament of lens UBERON:0006762

In the Relationship Report

s slabel user_slabel o olabel user_olabel
UBERON:0006762 suspensory ligament of lens ciliary zonules UBERON:0000965 lens lens

Relationship AS-AS report

This table contains terms for anatomical structures that are related to each other according to the ASCT+B table but are not related to each other in source ontologies via one of the relation types we consider valid for ASCT+B tables. Valid relationships are: part_of, e.g. corneal endothelium part_of cornea; subClassOf, e.g. left kidney subClassOf (is_a) kidney; and overlaps (has some part in), e.g. ureter overlaps kidney; connected_to, e.g. TBA. part_of and subClassOf relationships should be specific to general, e.g. left kidney (specific) to kidney (general); corneal endothelium (specific) to cornea (general). The deltaIC score is included because a high score (>50) can indicate that this order is reversed, e.g. TBA.

s slabel user_slabel o olabel user_olabel row_number deltaIC
2 UBERON:0004923 organ component layer mucosa of the lip UBERON:0003729 mouth mucosa mouth mucosa 31 23.2685
41 UBERON:0013475 gustatory gland gustatory gland (Von Ebner's gland) UBERON:0001830 minor salivary gland minor salivary gland 92 nan

Relationship CT-CT report

In the case of the CT-CT relationship, for each couple of terms, we verify for sub class of, part of and overlaps in the source ontologies. The deltaIC score is included because a high score (>50) can indicate that this order is reversed, e.g. TBA.

  • No issues found.

Relationship CT-AS report

In the case of the AS-CT relationship, for each couple of terms, we verify for connected to and has part in the source ontologies.

s slabel user_slabel o olabel user_olabel row_number deltaIC
0 CL:0000115 endothelial cell endothelial cell UBERON:0001736 submandibular gland submandibular gland 71 24.3174
1 CL:0000115 endothelial cell endothelial cell UBERON:0001832 sublingual gland sublingual gland 54 24.3174
3 CL:0000115 endothelial cell endothelial cell UBERON:0001831 parotid gland parotid gland 36 21.103
4 CL:0000115 endothelial cell endothelial cell UBERON:0001828 gingiva gingiva 16 20.656
5 CL:0000084 T cell T cell UBERON:0001828 gingiva gingiva 14 17.4089
6 CL:0000236 B cell B cell (non-plasma) UBERON:0001828 gingiva gingiva 19 17.261
7 CL:0000192 smooth muscle cell smooth muscle cell UBERON:0001832 sublingual gland sublingual gland 66 15.0619
8 CL:0000192 smooth muscle cell smooth muscle cell UBERON:0001736 submandibular gland submandibular gland 83 15.0619
9 CL:0000451 dendritic cell dendritic cell UBERON:0001736 submandibular gland submandibular gland 70 12.5224
10 CL:0000451 dendritic cell dendritic cell UBERON:0001832 sublingual gland sublingual gland 53 12.5224
11 CL:0000235 macrophage macrophage UBERON:0001832 sublingual gland sublingual gland 58 12.1754
12 CL:0000235 macrophage macrophage UBERON:0001736 submandibular gland submandibular gland 75 12.1754
13 CL:0000192 smooth muscle cell smooth muscle cell UBERON:0001831 parotid gland parotid gland 47 11.8476
14 CL:0000451 dendritic cell dendritic cell UBERON:0001831 parotid gland parotid gland 35 9.308
15 CL:0000235 macrophage macrophage UBERON:0001831 parotid gland parotid gland 40 8.96103
16 CL:0000451 dendritic cell dendritic cell UBERON:0001828 gingiva gingiva 22 8.86099
17 CL:0000235 macrophage macrophage UBERON:0001828 gingiva gingiva 18 8.51403
18 CL:0000148 melanocyte melanocyte UBERON:0001828 gingiva gingiva 17 7.48814
19 CL:0000669 pericyte pericyte UBERON:0001736 submandibular gland submandibular gland 80 6.36962
20 CL:0000669 pericyte pericyte UBERON:0001832 sublingual gland sublingual gland 63 6.36962
21 CL:0000312 keratinocyte keratinocyte UBERON:0001828 gingiva gingiva 21 5.52234
22 CL:0001065 innate lymphoid cell innate lymphoid cell UBERON:0001828 gingiva gingiva 28 5.13737
23 CL:0000097 mast cell mast cell UBERON:0001832 sublingual gland sublingual gland 59 5.11041
24 CL:0000097 mast cell mast cell UBERON:0001736 submandibular gland submandibular gland 76 5.11041
25 CL:0000136 adipocyte adipocyte UBERON:0001831 parotid gland parotid gland 33 5.06921
26 CL:0000623 natural killer cell NK (natural killer) cells UBERON:0001828 gingiva gingiva 24 4.17895
27 CL:0000775 neutrophil neutrophil UBERON:0001828 gingiva gingiva 25 3.32339
28 CL:0000669 pericyte pericyte UBERON:0001831 parotid gland parotid gland 44 3.15526
29 CL:0000097 mast cell mast cell UBERON:0001831 parotid gland parotid gland 41 1.89606
30 CL:0000097 mast cell mast cell UBERON:0001828 gingiva gingiva 15 1.44905
31 CL:0000242 Merkel cell Merkel cell UBERON:0001828 gingiva gingiva 20 nan
32 CL:0000453 Langerhans cell Langerhans cell UBERON:0001828 gingiva gingiva 23 nan
33 CL:0000786 plasma cell plasma cell UBERON:0001828 gingiva gingiva 26 nan
34 CL:0000815 regulatory T cell regulatory T cell (Treg) UBERON:0001828 gingiva gingiva 27 nan
35 CL:0000987 IgA plasma cell IgA secreting plasma cell UBERON:0001831 parotid gland parotid gland 38 nan
36 CL:4052048 intercalated cell of salivary gland intercalated duct epithelial cell UBERON:0035046 parotid gland intercalated duct intercalated duct 50 nan
37 CL:4052049 striated cell of salivary gland striated duct epithelial cell UBERON:0035047 parotid gland striated duct striated duct 51 nan
38 CL:0000987 IgA plasma cell IgA secreting plasma cell UBERON:0001832 sublingual gland sublingual gland 56 nan
39 CL:4052048 intercalated cell of salivary gland intercalated duct epithelial cell UBERON:0001838 sublingual duct intercalated duct 67 nan
40 CL:0000987 IgA plasma cell IgA secreting plasma cell UBERON:0001736 submandibular gland submandibular gland 73 nan

New CL terms

Report

New UBERON terms

Report

Informative reports (valid relationships)

Indirect relationship

Report

Relationship AS has part CT

Report