Spatial Transcriptomics

GeoMx (RNA) / GeoMx (protein) / GeoMx

Related files:

Excel and TSV templates for this schema will be available when the draft next-generation schema, to be used in all future submissions, is finalized (no later than Sept. 30).

Metadata schema

Version 2 (use this one) (draft - submission of data prepared using this schema will be supported by Sept. 30)


Directory schemas

Version 2 (use this one) (draft - submission of data prepared using this schema will be supported by Sept. 30) Version 0
pattern required? description
[^/]*[^/]*\.dcc (example: DSP-0000000000000-A-A01.dcc) Digital counts file containing sample by probe counts.
[^/]*\.pkc JSON file which contains mapping from probe IDs to gene IDs.
[^/]*\.xlsx Excel formatted file containing experimental metadata output by experimental platform.
extras\/.*   Folder for general lab-specific files related to the dataset. [Exists in all assays]