Spatial Transcriptomics
GeoMx (RNA) / GeoMx (protein) / GeoMx
Related files:
Excel and TSV templates for this schema will be available when the draft next-generation schema, to be used in all future submissions, is finalized (no later than Sept. 30).
Metadata schema
Directory schemas
pattern | required? | description |
---|---|---|
[^/]*[^/]*\.dcc (example: DSP-0000000000000-A-A01.dcc ) |
✓ | Digital counts file containing sample by probe counts. |
[^/]*\.pkc |
✓ | JSON file which contains mapping from probe IDs to gene IDs. |
[^/]*\.xlsx |
✓ | Excel formatted file containing experimental metadata output by experimental platform. |
extras\/.* |
Folder for general lab-specific files related to the dataset. [Exists in all assays] |