HuBMAP Data Upload Guidelines

Well-defined schemas ensure that HuBMAP data and metadata are reusable. If you are starting work on a new assay type, review the guidelines for directory schemas. If you have an upload prepared, it can be validated with, or if you only have an individual TSV, use Examples of both good and bad uploads, and the validation messages they produce, are available.

Assay types and their schemas are linked below.

Imaging mass spectrometry

Imaging assays

Other TSVs

Clinical imaging modalities

Sequence assays

Mass spectrometry