HuBMAP Data Upload Guidelines
Well-defined schemas ensure that HuBMAP data and metadata are reusable.
If you are starting work on a new assay type, review the
guidelines for directory schemas.
If you have an upload prepared, it can be validated with
validate_upload.py
,
or if you only have an individual TSV, use validate_tsv.py
.
Examples of both good and bad uploads,
and the validation messages they produce, are available.
Assay types and their schemas are linked below.
- An Excel file listing all the schemas and their fields is available.
- For more information, see the
ingest-validation-tools
repo.