Other TSVs
antibodies
Related files:
- 📝 Excel template: For metadata entry.
- 📝 TSV template: Alternative for metadata entry.
Changes:
- v1: Version number added.
- v2: Add concentration fields.
Metadata schema
Version 2 (use this one)
version
channel_id
antibody_name
rr_id
uniprot_accession_number
lot_number
dilution
concentration_value
concentration_unit
conjugated_cat_number
conjugated_tag
version
Current version of metadata schema. Template provides the correct value.
| constraint | value |
|---|---|
| enum | 2 |
| required | True |
channel_id
Structure of channel_id depends on assay type.
| constraint | value |
|---|---|
| required | True |
antibody_name
Anti-(target name) antibody. Not validated or used down-stream.
| constraint | value |
|---|---|
| required | True |
rr_id
The rr_id is a unique antibody identifier that comes from the Antibody Registry (https://antibodyregistry.org). Example: AB_10002075.
| constraint | value |
|---|---|
| pattern (regular expression) | AB_\d+ |
| required | True |
| url | prefix: https://scicrunch.org/resolver/RRID: |
uniprot_accession_number
The uniprot_accession_number is a unique identifier for proteins in the UniProt database (https://www.uniprot.org).
| constraint | value |
|---|---|
| required | True |
| url | prefix: https://www.uniprot.org/uniprot/ |
lot_number
The lot# is specific to the vendor. (eg: Abcam lot# GR3238979-1)
| constraint | value |
|---|---|
| required | True |
dilution
Antibody solutions may be diluted according to the experimental protocol. Leave blank if not applicable. Example: 1/200.
| constraint | value |
|---|---|
| required | False |
| pattern (regular expression) | 1/\d+ |
concentration_value
The concentration value of the antibody preparation. Leave blank if not applicable.
| constraint | value |
|---|---|
| type | number |
| required | False |
concentration_unit
The concentration units of the antibody preparation. Leave blank if not applicable.
| constraint | value |
|---|---|
| enum | ug/ml |
| required | False |
| required if | concentration_value present |
conjugated_cat_number
An antibody may be conjugated to a fluorescent tag or a metal tag for detection. Conjugated antibodies may be purchased from commercial providers. Leave blank if not applicable.
| constraint | value |
|---|---|
| required | False |
conjugated_tag
The name of the entity conjugated to the antibody. Leave blank if not applicable.
| constraint | value |
|---|---|
| required | False |
Version 1
version
Current version of metadata schema. Template provides the correct value.
| constraint | value |
|---|---|
| enum | 1 |
| required | True |
channel_id
Structure of channel_id depends on assay type.
| constraint | value |
|---|---|
| required | True |
antibody_name
Anti-(target name) antibody. Not validated or used down-stream.
| constraint | value |
|---|---|
| required | True |
rr_id
The rr_id is a unique antibody identifier that comes from the Antibody Registry (https://antibodyregistry.org). Example: AB_10002075.
| constraint | value |
|---|---|
| pattern (regular expression) | AB_\d+ |
| required | True |
| url | prefix: https://scicrunch.org/resolver/RRID: |
uniprot_accession_number
The uniprot_accession_number is a unique identifier for proteins in the UniProt database (https://www.uniprot.org).
| constraint | value |
|---|---|
| required | True |
| url | prefix: https://www.uniprot.org/uniprot/ |
lot_number
The lot# is specific to the vendor. (eg: Abcam lot# GR3238979-1)
| constraint | value |
|---|---|
| required | True |
dilution
Antibody solutions may be diluted according to the experimental protocol. Leave blank if not applicable. Example: 1/200.
| constraint | value |
|---|---|
| required | False |
| pattern (regular expression) | 1/\d+ |
conjugated_cat_number
An antibody may be conjugated to a fluorescent tag or a metal tag for detection. Conjugated antibodies may be purchased from commercial providers. Leave blank if not applicable.
| constraint | value |
|---|---|
| required | False |
conjugated_tag
The name of the entity conjugated to the antibody. Leave blank if not applicable.
| constraint | value |
|---|---|
| required | False |
Version 0
channel_id
Structure of channel_id depends on assay type.
| constraint | value |
|---|---|
| required | True |
antibody_name
Anti-(target name) antibody. Not validated or used down-stream.
| constraint | value |
|---|---|
| required | True |
rr_id
The rr_id is a unique antibody identifier that comes from the Antibody Registry (https://antibodyregistry.org). Example: AB_10002075.
| constraint | value |
|---|---|
| pattern (regular expression) | AB_\d+ |
| required | True |
| url | prefix: https://scicrunch.org/resolver/RRID: |
uniprot_accession_number
The uniprot_accession_number is a unique identifier for proteins in the UniProt database (https://www.uniprot.org).
| constraint | value |
|---|---|
| required | True |
| url | prefix: https://www.uniprot.org/uniprot/ |
lot_number
The lot# is specific to the vendor. (eg: Abcam lot# GR3238979-1)
| constraint | value |
|---|---|
| required | True |
dilution
Antibody solutions may be diluted according to the experimental protocol. Leave blank if not applicable. Example: 1/200.
| constraint | value |
|---|---|
| required | False |
| pattern (regular expression) | 1/\d+ |
conjugated_cat_number
An antibody may be conjugated to a fluorescent tag or a metal tag for detection. Conjugated antibodies may be purchased from commercial providers. Leave blank if not applicable.
| constraint | value |
|---|---|
| required | False |
conjugated_tag
The name of the entity conjugated to the antibody. Leave blank if not applicable.
| constraint | value |
|---|---|
| required | False |