Other TSVs

antibodies

Related files:

Changes:

Metadata schema

Field types

Version 2 (current)

version
channel_id
antibody_name
rr_id
uniprot_accession_number
lot_number
dilution
concentration_value
concentration_unit
conjugated_cat_number
conjugated_tag

version

Current version of metadata schema. Template provides the correct value.

constraint value
enum 2
required True

channel_id

Structure of channel_id depends on assay type.

constraint value
required True

antibody_name

Anti-(target name) antibody. Not validated or used down-stream.

constraint value
required True

rr_id

The rr_id is a unique antibody identifier that comes from the Antibody Registry (https://antibodyregistry.org). Example: AB_10002075.

constraint value
pattern (regular expression) AB_\d+
required True
url prefix: https://scicrunch.org/resolver/RRID:

uniprot_accession_number

The uniprot_accession_number is a unique identifier for proteins in the UniProt database (https://www.uniprot.org).

constraint value
required True
url prefix: https://www.uniprot.org/uniprot/

lot_number

The lot# is specific to the vendor. (eg: Abcam lot# GR3238979-1)

constraint value
required True

dilution

Antibody solutions may be diluted according to the experimental protocol. Leave blank if not applicable. Example: 1/200.

constraint value
required False
pattern (regular expression) 1/\d+

concentration_value

The concentration value of the antibody preparation. Leave blank if not applicable.

constraint value
type number
required False

concentration_unit

The concentration units of the antibody preparation. Leave blank if not applicable.

constraint value
enum ug/ml
required False
required if concentration_value present

conjugated_cat_number

An antibody may be conjugated to a fluorescent tag or a metal tag for detection. Conjugated antibodies may be purchased from commercial providers. Leave blank if not applicable.

constraint value
required False

conjugated_tag

The name of the entity conjugated to the antibody. Leave blank if not applicable.

constraint value
required False
Version 1

version

Current version of metadata schema. Template provides the correct value.

constraint value
enum 1
required True

channel_id

Structure of channel_id depends on assay type.

constraint value
required True

antibody_name

Anti-(target name) antibody. Not validated or used down-stream.

constraint value
required True

rr_id

The rr_id is a unique antibody identifier that comes from the Antibody Registry (https://antibodyregistry.org). Example: AB_10002075.

constraint value
pattern (regular expression) AB_\d+
required True
url prefix: https://scicrunch.org/resolver/RRID:

uniprot_accession_number

The uniprot_accession_number is a unique identifier for proteins in the UniProt database (https://www.uniprot.org).

constraint value
required True
url prefix: https://www.uniprot.org/uniprot/

lot_number

The lot# is specific to the vendor. (eg: Abcam lot# GR3238979-1)

constraint value
required True

dilution

Antibody solutions may be diluted according to the experimental protocol. Leave blank if not applicable. Example: 1/200.

constraint value
required False
pattern (regular expression) 1/\d+

conjugated_cat_number

An antibody may be conjugated to a fluorescent tag or a metal tag for detection. Conjugated antibodies may be purchased from commercial providers. Leave blank if not applicable.

constraint value
required False

conjugated_tag

The name of the entity conjugated to the antibody. Leave blank if not applicable.

constraint value
required False
Version 0

channel_id

Structure of channel_id depends on assay type.

constraint value
required True

antibody_name

Anti-(target name) antibody. Not validated or used down-stream.

constraint value
required True

rr_id

The rr_id is a unique antibody identifier that comes from the Antibody Registry (https://antibodyregistry.org). Example: AB_10002075.

constraint value
pattern (regular expression) AB_\d+
required True
url prefix: https://scicrunch.org/resolver/RRID:

uniprot_accession_number

The uniprot_accession_number is a unique identifier for proteins in the UniProt database (https://www.uniprot.org).

constraint value
required True
url prefix: https://www.uniprot.org/uniprot/

lot_number

The lot# is specific to the vendor. (eg: Abcam lot# GR3238979-1)

constraint value
required True

dilution

Antibody solutions may be diluted according to the experimental protocol. Leave blank if not applicable. Example: 1/200.

constraint value
required False
pattern (regular expression) 1/\d+

conjugated_cat_number

An antibody may be conjugated to a fluorescent tag or a metal tag for detection. Conjugated antibodies may be purchased from commercial providers. Leave blank if not applicable.

constraint value
required False

conjugated_tag

The name of the entity conjugated to the antibody. Leave blank if not applicable.

constraint value
required False