Related files:

Excel and TSV templates for this schema will be available when the draft next-generation schema, to be used in all future submissions, is finalized (no later than Sept. 30).

Metadata schema

Version 2 (use this one) (draft - submission of data prepared using this schema will be supported by Sept. 30) (TBD)

Directory schemas

Version 2.0 (use this one)

pattern	required?	description
extras\/.*	✓	Folder for general lab-specific files related to the dataset. [Exists in all assays]
data\/.+ (example: data/file1.ext)	✓	Supplementary data files for the publication. All files referenced by the Vitessce visualization configurations in the vignettes must be included in this directory.
vignettes\/.*	✓	Subdirectory containing Vitessce visualization files and a description of those files.
vignettes\/vignette_\d+\/[^\/]+\.json (example: vignettes/vignette_01/file1.json)		Vitessce visualization configuration files. One or more visualization configurations can be provided per vignette.
vignettes\/vignette_\d+\/description\.md (example: vignettes/vignette_02/description.md)		Description of the vignette and titles for the visualization configuration files.